Chapter Advancing and Integrating ‘Biomonitoring 2.0’ with New Molecular Tools for Marine Biodivesity and Ecosystem Assessments
Global declines in biodiversity have become increasingly severe. Traditional monitoring approaches for assessing marine species distributions and abundances are time consuming, costly, and manpower intensive. Fortunately, rapid progress of sequencing technologies from first-generation to high-throug...
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| প্রধান লেখক: | , , |
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| বিন্যাস: | Online |
| ভাষা: | ইংরেজি |
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Taylor & Francis
2023
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| বিষয়গুলি: | |
| অনলাইন ব্যবহার করুন: | ONIX_20231016_9781032426969_6 |
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কোনো ট্যাগ নেই, প্রথমজন হিসাবে ট্যাগ করুন!
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| _version_ | 1869520919349690368 |
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| author | Cheong Aden Ip, Yin Jin Marc Chang, Jia Huang, Danwei |
| author_browse | Cheong Aden Ip, Yin Huang, Danwei Jin Marc Chang, Jia |
| author_facet | Cheong Aden Ip, Yin Jin Marc Chang, Jia Huang, Danwei |
| author_sort | Cheong Aden Ip, Yin |
| collection | Directory of Open Access Books |
| description | Global declines in biodiversity have become increasingly severe. Traditional monitoring approaches for assessing marine species distributions and abundances are time consuming, costly, and manpower intensive. Fortunately, rapid progress of sequencing technologies from first-generation to high-throughput sequencing have resulted in improvements in experimental techniques. These advances have accelerated rates of species discovery and identification, enabling community-level biomonitoring – the ‘Biomonitoring 2.0’ framework. Simultaneous multispecies identifications in mixed-sample pools are now mainstream with DNA metabarcoding, upscaling monitoring from the individual specimen to the ecosystem scale. In this review, we examine the progress of DNA metabarcoding over the last decade in the characterisation of marine macrobiota to microbial communities. By melding molecular techniques and more traditional taxonomic tools, this integrative Biomonitoring 2.0 approach is tailored to improve the overall effectiveness of biomonitoring. As such, we here assess its accuracy, expertise requirement, general applicability, time, cost-effectiveness, and throughput for biomonitoring. We highlight various methodological challenges that must be considered during implementation, including completeness of reference databases, representativeness of sequencing read counts for quantitative estimates, and supplementation with environmental RNA for discerning live signals from legacy DNA. Finally, we conclude with an outlook of the enhanced Biomonitoring 2.0 framework for mass adoption by ecologists and managers, as well as the prospects of emerging rapid detection technologies for ecosystem surveillance. |
| format | Online |
| id | doab-20.500.12854ir-117583 |
| institution | Directory of Open Access Books |
| language | eng |
| publishDate | 2023 |
| publishDateRange | 2023 |
| publishDateSort | 2023 |
| publisher | Taylor & Francis |
| publisherStr | Taylor & Francis |
| record_format | ojs |
| spelling | doab-20.500.12854ir-1175832025-03-12T19:50:13Z Chapter Advancing and Integrating ‘Biomonitoring 2.0’ with New Molecular Tools for Marine Biodivesity and Ecosystem Assessments Cheong Aden Ip, Yin Jin Marc Chang, Jia Huang, Danwei Barcoding Bioinformatics Environmental DNA Metabarcoding Environmental RNA Global declines in biodiversity have become increasingly severe. Traditional monitoring approaches for assessing marine species distributions and abundances are time consuming, costly, and manpower intensive. Fortunately, rapid progress of sequencing technologies from first-generation to high-throughput sequencing have resulted in improvements in experimental techniques. These advances have accelerated rates of species discovery and identification, enabling community-level biomonitoring – the ‘Biomonitoring 2.0’ framework. Simultaneous multispecies identifications in mixed-sample pools are now mainstream with DNA metabarcoding, upscaling monitoring from the individual specimen to the ecosystem scale. In this review, we examine the progress of DNA metabarcoding over the last decade in the characterisation of marine macrobiota to microbial communities. By melding molecular techniques and more traditional taxonomic tools, this integrative Biomonitoring 2.0 approach is tailored to improve the overall effectiveness of biomonitoring. As such, we here assess its accuracy, expertise requirement, general applicability, time, cost-effectiveness, and throughput for biomonitoring. We highlight various methodological challenges that must be considered during implementation, including completeness of reference databases, representativeness of sequencing read counts for quantitative estimates, and supplementation with environmental RNA for discerning live signals from legacy DNA. Finally, we conclude with an outlook of the enhanced Biomonitoring 2.0 framework for mass adoption by ecologists and managers, as well as the prospects of emerging rapid detection technologies for ecosystem surveillance. 2023-10-17T04:01:25Z 2023-10-17T04:01:25Z 2023-10-16T09:44:25Z 2023 chapter ONIX_20231016_9781032426969_6 https://library.oapen.org/handle/20.500.12657/76832 9781032426969 9781032548456 9781003363873 https://directory.doabooks.org/handle/20.500.12854/117583 eng open access image/jpeg image/jpeg image/jpeg Attribution-NonCommercial-NoDerivatives 4.0 International Attribution-NonCommercial-NoDerivatives 4.0 International Attribution-NonCommercial-NoDerivatives 4.0 International https://library.oapen.org/bitstream/20.500.12657/76832/1/9781003363873_10.1201_9781003363873-6.pdf https://library.oapen.org/bitstream/20.500.12657/76832/1/9781003363873_10.1201_9781003363873-6.pdf https://library.oapen.org/bitstream/20.500.12657/76832/1/9781003363873_10.1201_9781003363873-6.pdf Taylor & Francis CRC Press 10.1201/9781003363873-7 10.1201/9781003363873-7 fa69b019-f4ee-4979-8d42-c6b6c476b5f0 Oceanography and Marine Biology Temasek Foundation 44909cb6-ff1b-45d1-be4f-12c79ca5d50b 9781032426969 9781032548456 9781003363873 CRC Press 33 Boca Raton, Abingdon [...] open access |
| spellingShingle | Barcoding Bioinformatics Environmental DNA Metabarcoding Environmental RNA Cheong Aden Ip, Yin Jin Marc Chang, Jia Huang, Danwei Chapter Advancing and Integrating ‘Biomonitoring 2.0’ with New Molecular Tools for Marine Biodivesity and Ecosystem Assessments |
| title | Chapter Advancing and Integrating ‘Biomonitoring 2.0’ with New Molecular Tools for Marine Biodivesity and Ecosystem Assessments |
| title_full | Chapter Advancing and Integrating ‘Biomonitoring 2.0’ with New Molecular Tools for Marine Biodivesity and Ecosystem Assessments |
| title_fullStr | Chapter Advancing and Integrating ‘Biomonitoring 2.0’ with New Molecular Tools for Marine Biodivesity and Ecosystem Assessments |
| title_full_unstemmed | Chapter Advancing and Integrating ‘Biomonitoring 2.0’ with New Molecular Tools for Marine Biodivesity and Ecosystem Assessments |
| title_short | Chapter Advancing and Integrating ‘Biomonitoring 2.0’ with New Molecular Tools for Marine Biodivesity and Ecosystem Assessments |
| title_sort | chapter advancing and integrating biomonitoring 2 0 with new molecular tools for marine biodivesity and ecosystem assessments |
| topic | Barcoding Bioinformatics Environmental DNA Metabarcoding Environmental RNA |
| topic_facet | Barcoding Bioinformatics Environmental DNA Metabarcoding Environmental RNA |
| url | ONIX_20231016_9781032426969_6 |
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