Genomic Analysis of Antibiotics Resistance in Pathogens

The emergence of antibiotic-resistant pathogens currently represents a serious threat to public health and the economy. Due to antibiotic treatments in humans and veterinary medicine, prophylactic use and environmental contamination, bacteria are today more frequently exposed to unnatural doses of a...

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Language:English
Published: MDPI - Multidisciplinary Digital Publishing Institute 2023
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description The emergence of antibiotic-resistant pathogens currently represents a serious threat to public health and the economy. Due to antibiotic treatments in humans and veterinary medicine, prophylactic use and environmental contamination, bacteria are today more frequently exposed to unnatural doses of antibiotics and their selective effect.Antibiotic resistance can be encoded on chromosomes, plasmids, or other mobile genetic elements in bacteria. It may also result from mutations that lead to changes in the affinity of antibiotics for their targets or in the ability of antibiotics to act on bacterial growth or death. Exposure of bacteria, bacterial populations, and microbial communities to antibiotics at different concentrations shapes their genomic dynamics, as does the mobilisation and spread of resistance determinants. It is, therefore, essential to understand the dynamics and mobilisation of genes encoding antibiotic resistance, in human, animal, plant, and environmental microbiomes, through genomic and metagenomic approaches and bioinformatics analyses.This Special Issue gathers research publications on the horizontal transfer of antibiotic-resistance genes, their dissemination and epidemiology, their association with bacterial virulence, between bacterial genotypes and their phenotypes, and other related research topics.
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institution Directory of Open Access Books
language eng
publishDate 2023
publishDateRange 2023
publishDateSort 2023
publisher MDPI - Multidisciplinary Digital Publishing Institute
publisherStr MDPI - Multidisciplinary Digital Publishing Institute
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spelling doab-20.500.12854ir-967362024-03-28T03:31:14Z Genomic Analysis of Antibiotics Resistance in Pathogens Nogueira, Teresa V. antimicrobial drug resistance pan-genome multilocus sequence typing nosocomial infections MDR P. aeruginosa titanium dioxide nanoparticles biofilm efflux pumps quorum-sensing system real-time polymerase chain reaction MDR E. coli ESBLs MBLs MAR index Francisella tularensis resazurin DipA PilD tularemia antibiotic resistance Acinetobacter baumannii colistin carbapenems multidrug resistant WGS KPC-70 Klebsiella pneumoniae ceftazidime/avibactam resistance KPC-3 ST13 KPC-variant hypermucoviscosity hypervirulence Portugal comparative genomic analysis CA-MRSA EMRSA-15 PVL-positive ST22 N. gonorrhoeae fluoroquinolone AMR ciprofloxacin Mycobacteroides abscessus tigecycline genetic determinants WhiB7 SigH RshA antimicrobial resistance hvKP K2 capsule ST14 fimbrial proteins aerobactin antibiotic resistance virulence plasmid Integrative and Conjugative Element co-selection genomics evolution S. Infantis multidrug-resistance blaCTX-M-65 fosA3 heavy-metal resistance pESI-like megaplasmid whole-genome sequencing ST213 worldwide strains genomic databases antibiotic resistance plasmids Typhimurium n/a thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general thema EDItEUR::P Mathematics and Science::PS Biology, life sciences thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSG Microbiology (non-medical) The emergence of antibiotic-resistant pathogens currently represents a serious threat to public health and the economy. Due to antibiotic treatments in humans and veterinary medicine, prophylactic use and environmental contamination, bacteria are today more frequently exposed to unnatural doses of antibiotics and their selective effect.Antibiotic resistance can be encoded on chromosomes, plasmids, or other mobile genetic elements in bacteria. It may also result from mutations that lead to changes in the affinity of antibiotics for their targets or in the ability of antibiotics to act on bacterial growth or death. Exposure of bacteria, bacterial populations, and microbial communities to antibiotics at different concentrations shapes their genomic dynamics, as does the mobilisation and spread of resistance determinants. It is, therefore, essential to understand the dynamics and mobilisation of genes encoding antibiotic resistance, in human, animal, plant, and environmental microbiomes, through genomic and metagenomic approaches and bioinformatics analyses.This Special Issue gathers research publications on the horizontal transfer of antibiotic-resistance genes, their dissemination and epidemiology, their association with bacterial virulence, between bacterial genotypes and their phenotypes, and other related research topics. 2023-02-02T16:45:27Z 2023-02-02T16:45:27Z 2023 book ONIX_20230202_9783036565248_137 9783036565248 9783036565231 https://directory.doabooks.org/handle/20.500.12854/96736 eng image/jpeg Attribution 4.0 International https://mdpi.com/books/pdfview/book/6682 https://mdpi.com/books/pdfview/book/6682 MDPI - Multidisciplinary Digital Publishing Institute 10.3390/books978-3-0365-6523-1 10.3390/books978-3-0365-6523-1 46cabcaa-dd94-4bfe-87b4-55023c1b36d0 9783036565248 9783036565231 220 Basel open access
spellingShingle antimicrobial
drug resistance
pan-genome
multilocus sequence typing
nosocomial infections
MDR P. aeruginosa
titanium dioxide nanoparticles
biofilm
efflux pumps
quorum-sensing system
real-time polymerase chain reaction
MDR E. coli
ESBLs
MBLs
MAR index
Francisella tularensis
resazurin
DipA
PilD
tularemia
antibiotic
resistance
Acinetobacter baumannii
colistin
carbapenems
multidrug resistant
WGS
KPC-70
Klebsiella pneumoniae
ceftazidime/avibactam resistance
KPC-3
ST13
KPC-variant
hypermucoviscosity
hypervirulence
Portugal
comparative genomic analysis
CA-MRSA
EMRSA-15
PVL-positive
ST22
N. gonorrhoeae
fluoroquinolone
AMR
ciprofloxacin
Mycobacteroides abscessus
tigecycline
genetic determinants
WhiB7
SigH
RshA
antimicrobial resistance
hvKP
K2 capsule
ST14
fimbrial proteins
aerobactin
antibiotic resistance
virulence
plasmid
Integrative and Conjugative Element
co-selection
genomics
evolution
S. Infantis
multidrug-resistance
blaCTX-M-65
fosA3
heavy-metal resistance
pESI-like megaplasmid
whole-genome sequencing
ST213 worldwide strains
genomic databases
antibiotic resistance plasmids
Typhimurium
n/a
thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general
thema EDItEUR::P Mathematics and Science::PS Biology, life sciences
thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSG Microbiology (non-medical)
Genomic Analysis of Antibiotics Resistance in Pathogens
title Genomic Analysis of Antibiotics Resistance in Pathogens
title_full Genomic Analysis of Antibiotics Resistance in Pathogens
title_fullStr Genomic Analysis of Antibiotics Resistance in Pathogens
title_full_unstemmed Genomic Analysis of Antibiotics Resistance in Pathogens
title_short Genomic Analysis of Antibiotics Resistance in Pathogens
title_sort genomic analysis of antibiotics resistance in pathogens
topic antimicrobial
drug resistance
pan-genome
multilocus sequence typing
nosocomial infections
MDR P. aeruginosa
titanium dioxide nanoparticles
biofilm
efflux pumps
quorum-sensing system
real-time polymerase chain reaction
MDR E. coli
ESBLs
MBLs
MAR index
Francisella tularensis
resazurin
DipA
PilD
tularemia
antibiotic
resistance
Acinetobacter baumannii
colistin
carbapenems
multidrug resistant
WGS
KPC-70
Klebsiella pneumoniae
ceftazidime/avibactam resistance
KPC-3
ST13
KPC-variant
hypermucoviscosity
hypervirulence
Portugal
comparative genomic analysis
CA-MRSA
EMRSA-15
PVL-positive
ST22
N. gonorrhoeae
fluoroquinolone
AMR
ciprofloxacin
Mycobacteroides abscessus
tigecycline
genetic determinants
WhiB7
SigH
RshA
antimicrobial resistance
hvKP
K2 capsule
ST14
fimbrial proteins
aerobactin
antibiotic resistance
virulence
plasmid
Integrative and Conjugative Element
co-selection
genomics
evolution
S. Infantis
multidrug-resistance
blaCTX-M-65
fosA3
heavy-metal resistance
pESI-like megaplasmid
whole-genome sequencing
ST213 worldwide strains
genomic databases
antibiotic resistance plasmids
Typhimurium
n/a
thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general
thema EDItEUR::P Mathematics and Science::PS Biology, life sciences
thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSG Microbiology (non-medical)
topic_facet antimicrobial
drug resistance
pan-genome
multilocus sequence typing
nosocomial infections
MDR P. aeruginosa
titanium dioxide nanoparticles
biofilm
efflux pumps
quorum-sensing system
real-time polymerase chain reaction
MDR E. coli
ESBLs
MBLs
MAR index
Francisella tularensis
resazurin
DipA
PilD
tularemia
antibiotic
resistance
Acinetobacter baumannii
colistin
carbapenems
multidrug resistant
WGS
KPC-70
Klebsiella pneumoniae
ceftazidime/avibactam resistance
KPC-3
ST13
KPC-variant
hypermucoviscosity
hypervirulence
Portugal
comparative genomic analysis
CA-MRSA
EMRSA-15
PVL-positive
ST22
N. gonorrhoeae
fluoroquinolone
AMR
ciprofloxacin
Mycobacteroides abscessus
tigecycline
genetic determinants
WhiB7
SigH
RshA
antimicrobial resistance
hvKP
K2 capsule
ST14
fimbrial proteins
aerobactin
antibiotic resistance
virulence
plasmid
Integrative and Conjugative Element
co-selection
genomics
evolution
S. Infantis
multidrug-resistance
blaCTX-M-65
fosA3
heavy-metal resistance
pESI-like megaplasmid
whole-genome sequencing
ST213 worldwide strains
genomic databases
antibiotic resistance plasmids
Typhimurium
n/a
thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general
thema EDItEUR::P Mathematics and Science::PS Biology, life sciences
thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSG Microbiology (non-medical)
url ONIX_20230202_9783036565248_137