Biophysics of Nucleic Acids Celebrating the 75th Birthday of Professor Kenneth J. Breslauer

This Special Issue comprises 15 papers broadly outlining current trends in nucleic acid biophysics. It contains original research papers and reviews on structure, stability, and interactions of canonical and non-canonical nucleic acids. The authors describe the use of established, time-honored exper...

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collection Directory of Open Access Books
description This Special Issue comprises 15 papers broadly outlining current trends in nucleic acid biophysics. It contains original research papers and reviews on structure, stability, and interactions of canonical and non-canonical nucleic acids. The authors describe the use of established, time-honored experimental and computational techniques as well as their more recently developed counterparts. Molecular insights that can be gained from the papers collected in this issue range from the fundamental to the applied with emphasis on biological functions and biomedical prospects of nucleic acids. The collection is not meant to be exhaustive, but to highlight recent advances from select laboratories worldwide. Nevertheless, it represents a useful guide for scientists who wish to familiarize themselves with biophysical topics in nucleic acid research. This Special Issue will be useful both for researchers who study fundamental aspects of nucleic acid structure, stability, and dynamics, as well as for those that are mainly interested in practical biological and biomedical applications of nucleic acids.
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institution Directory of Open Access Books
language eng
publishDate 2023
publishDateRange 2023
publishDateSort 2023
publisher MDPI - Multidisciplinary Digital Publishing Institute
publisherStr MDPI - Multidisciplinary Digital Publishing Institute
record_format ojs
spelling doab-20.500.12854ir-966282024-03-28T03:33:16Z Biophysics of Nucleic Acids Celebrating the 75th Birthday of Professor Kenneth J. Breslauer Chalikian, Tigran Völker, Jens nucleic acid structures nucleic acid conformation biological structure database DNA RNA validation standards G-quadruplex replication thermodynamics ligand topology quadruplex-duplex hybrids minor groove binding drugs stability optical spectroscopy nucleic acids charge electrostatic potential ab initio methods NMR spectroscopy molecular dynamics forcefield AMBER B-DNA DNA-hairpin perchlorates brines pressure Mars habitability DNA minor groove binder mixed base-pair DNA sequences sequence selectivity ligand–DNA complex thermodynamic molecular curvature heterocyclic diamidine biosensor calorimetry DNA conjugate metal ion triple helix silver ion lanthanide ATP sensor aptamer terpyridine sequence edition DNAzyme molecular dynamics simulation (MD) potential of mean force (PMF) dsDNA–dsDNA interactions flexibility origins of life DNA-protein networks protocells DNA sequence-dependent structure DNA deformability DNA sequence context DNA curvature DNA minicircles hydrostatic pressure volume CD spectroscopy G-quadruplexes potassium polymorphism kinetics folding kinetic models fitting aurintricarboxylic acid (ATA) salicylic acid polymers methylene-salicylic acid SARS-CoV-2 RNA-dependent RNA polymerase (RdRp) yeast ribosomes human serum albumin (HSA) molecular recognition biological function and viral disease inhibitor binding single-molecule biophysics nucleic acid thermodynamics statistical mechanics fluctuation theorems computational biophysics n/a drug discovery drug-target interactions thermodynamic binding signatures isothermal titration calorimetry lead optimization fragment-based drug discovery drug-like properties enthalpic efficiency group efficiency lipophilic efficiency thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general thema EDItEUR::P Mathematics and Science::PS Biology, life sciences This Special Issue comprises 15 papers broadly outlining current trends in nucleic acid biophysics. It contains original research papers and reviews on structure, stability, and interactions of canonical and non-canonical nucleic acids. The authors describe the use of established, time-honored experimental and computational techniques as well as their more recently developed counterparts. Molecular insights that can be gained from the papers collected in this issue range from the fundamental to the applied with emphasis on biological functions and biomedical prospects of nucleic acids. The collection is not meant to be exhaustive, but to highlight recent advances from select laboratories worldwide. Nevertheless, it represents a useful guide for scientists who wish to familiarize themselves with biophysical topics in nucleic acid research. This Special Issue will be useful both for researchers who study fundamental aspects of nucleic acid structure, stability, and dynamics, as well as for those that are mainly interested in practical biological and biomedical applications of nucleic acids. 2023-02-02T16:26:46Z 2023-02-02T16:26:46Z 2023 book ONIX_20230202_9783036560984_29 9783036560984 9783036560977 https://directory.doabooks.org/handle/20.500.12854/96628 eng image/jpeg Attribution 4.0 International https://mdpi.com/books/pdfview/book/6573 https://mdpi.com/books/pdfview/book/6573 MDPI - Multidisciplinary Digital Publishing Institute 10.3390/books978-3-0365-6097-7 10.3390/books978-3-0365-6097-7 46cabcaa-dd94-4bfe-87b4-55023c1b36d0 9783036560984 9783036560977 282 Basel open access
spellingShingle nucleic acid structures
nucleic acid conformation
biological structure database
DNA
RNA
validation standards
G-quadruplex
replication
thermodynamics
ligand
topology
quadruplex-duplex hybrids
minor groove binding drugs
stability
optical spectroscopy
nucleic acids
charge
electrostatic potential
ab initio methods
NMR spectroscopy
molecular dynamics
forcefield
AMBER
B-DNA
DNA-hairpin
perchlorates
brines
pressure
Mars
habitability
DNA minor groove binder
mixed base-pair DNA sequences
sequence selectivity
ligand–DNA complex thermodynamic
molecular curvature
heterocyclic diamidine
biosensor
calorimetry
DNA conjugate
metal ion
triple helix
silver ion
lanthanide
ATP sensor
aptamer
terpyridine
sequence edition
DNAzyme
molecular dynamics simulation (MD)
potential of mean force (PMF)
dsDNA–dsDNA interactions
flexibility
origins of life
DNA-protein networks
protocells
DNA sequence-dependent structure
DNA deformability
DNA sequence context
DNA curvature
DNA minicircles
hydrostatic pressure
volume
CD spectroscopy
G-quadruplexes
potassium
polymorphism
kinetics
folding
kinetic models
fitting
aurintricarboxylic acid (ATA)
salicylic acid polymers
methylene-salicylic acid
SARS-CoV-2
RNA-dependent RNA polymerase (RdRp)
yeast ribosomes
human serum albumin (HSA)
molecular recognition
biological function and viral disease
inhibitor binding
single-molecule biophysics
nucleic acid thermodynamics
statistical mechanics
fluctuation theorems
computational biophysics
n/a
drug discovery
drug-target interactions
thermodynamic binding signatures
isothermal titration calorimetry
lead optimization
fragment-based drug discovery
drug-like properties
enthalpic efficiency
group efficiency
lipophilic efficiency
thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general
thema EDItEUR::P Mathematics and Science::PS Biology, life sciences
Biophysics of Nucleic Acids Celebrating the 75th Birthday of Professor Kenneth J. Breslauer
title Biophysics of Nucleic Acids Celebrating the 75th Birthday of Professor Kenneth J. Breslauer
title_full Biophysics of Nucleic Acids Celebrating the 75th Birthday of Professor Kenneth J. Breslauer
title_fullStr Biophysics of Nucleic Acids Celebrating the 75th Birthday of Professor Kenneth J. Breslauer
title_full_unstemmed Biophysics of Nucleic Acids Celebrating the 75th Birthday of Professor Kenneth J. Breslauer
title_short Biophysics of Nucleic Acids Celebrating the 75th Birthday of Professor Kenneth J. Breslauer
title_sort biophysics of nucleic acids celebrating the 75th birthday of professor kenneth j breslauer
topic nucleic acid structures
nucleic acid conformation
biological structure database
DNA
RNA
validation standards
G-quadruplex
replication
thermodynamics
ligand
topology
quadruplex-duplex hybrids
minor groove binding drugs
stability
optical spectroscopy
nucleic acids
charge
electrostatic potential
ab initio methods
NMR spectroscopy
molecular dynamics
forcefield
AMBER
B-DNA
DNA-hairpin
perchlorates
brines
pressure
Mars
habitability
DNA minor groove binder
mixed base-pair DNA sequences
sequence selectivity
ligand–DNA complex thermodynamic
molecular curvature
heterocyclic diamidine
biosensor
calorimetry
DNA conjugate
metal ion
triple helix
silver ion
lanthanide
ATP sensor
aptamer
terpyridine
sequence edition
DNAzyme
molecular dynamics simulation (MD)
potential of mean force (PMF)
dsDNA–dsDNA interactions
flexibility
origins of life
DNA-protein networks
protocells
DNA sequence-dependent structure
DNA deformability
DNA sequence context
DNA curvature
DNA minicircles
hydrostatic pressure
volume
CD spectroscopy
G-quadruplexes
potassium
polymorphism
kinetics
folding
kinetic models
fitting
aurintricarboxylic acid (ATA)
salicylic acid polymers
methylene-salicylic acid
SARS-CoV-2
RNA-dependent RNA polymerase (RdRp)
yeast ribosomes
human serum albumin (HSA)
molecular recognition
biological function and viral disease
inhibitor binding
single-molecule biophysics
nucleic acid thermodynamics
statistical mechanics
fluctuation theorems
computational biophysics
n/a
drug discovery
drug-target interactions
thermodynamic binding signatures
isothermal titration calorimetry
lead optimization
fragment-based drug discovery
drug-like properties
enthalpic efficiency
group efficiency
lipophilic efficiency
thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general
thema EDItEUR::P Mathematics and Science::PS Biology, life sciences
topic_facet nucleic acid structures
nucleic acid conformation
biological structure database
DNA
RNA
validation standards
G-quadruplex
replication
thermodynamics
ligand
topology
quadruplex-duplex hybrids
minor groove binding drugs
stability
optical spectroscopy
nucleic acids
charge
electrostatic potential
ab initio methods
NMR spectroscopy
molecular dynamics
forcefield
AMBER
B-DNA
DNA-hairpin
perchlorates
brines
pressure
Mars
habitability
DNA minor groove binder
mixed base-pair DNA sequences
sequence selectivity
ligand–DNA complex thermodynamic
molecular curvature
heterocyclic diamidine
biosensor
calorimetry
DNA conjugate
metal ion
triple helix
silver ion
lanthanide
ATP sensor
aptamer
terpyridine
sequence edition
DNAzyme
molecular dynamics simulation (MD)
potential of mean force (PMF)
dsDNA–dsDNA interactions
flexibility
origins of life
DNA-protein networks
protocells
DNA sequence-dependent structure
DNA deformability
DNA sequence context
DNA curvature
DNA minicircles
hydrostatic pressure
volume
CD spectroscopy
G-quadruplexes
potassium
polymorphism
kinetics
folding
kinetic models
fitting
aurintricarboxylic acid (ATA)
salicylic acid polymers
methylene-salicylic acid
SARS-CoV-2
RNA-dependent RNA polymerase (RdRp)
yeast ribosomes
human serum albumin (HSA)
molecular recognition
biological function and viral disease
inhibitor binding
single-molecule biophysics
nucleic acid thermodynamics
statistical mechanics
fluctuation theorems
computational biophysics
n/a
drug discovery
drug-target interactions
thermodynamic binding signatures
isothermal titration calorimetry
lead optimization
fragment-based drug discovery
drug-like properties
enthalpic efficiency
group efficiency
lipophilic efficiency
thema EDItEUR::G Reference, Information and Interdisciplinary subjects::GP Research and information: general
thema EDItEUR::P Mathematics and Science::PS Biology, life sciences
url ONIX_20230202_9783036560984_29